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slurm unlimited time

Niransha answered on December 6, 2022 Popularity 1/10 Helpfulness 1/10

answer slurm unlimited time

slurm unlimited time

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#!/bin/sh
#############################################################
#### dependacy jobs - unlimited time for small time jobs ####
#### this will submit one job after another             #####
#### Poor PoleCat 12/5/2022  ########################
#############################################################

#r m jobs.txt

# submit the fist job here
jb1=$(sbatch your_path_n/ur_slurm_script.sh)
id1=`echo $jb1 | awk '{print $4}'`

echo  " first job $id1 "
#echo  " first job $id1 "  >> jobs.txt

##################################################
# second job when for loop is 2
for (( i=2; i<=100; i++ ))    #begin with 2 here for easy naming
do

if [[ $i == 2 ]];
then


nid=$id1
jobsub=$(sbatch --dependency=afterany:$nid your_path_n/ur_slurm_script.sh)
nid=`echo $jobsub | awk '{print $4}'`

echo " second job $nid depends on $id1 #####"
#echo " second job $nid depends on $id1 #####"  >> jobs.txt



############## other jobs when i is not 2 ####################

else

nbefore=$nid

nid=$nid
jobsub=$(sbatch --dependency=afterany:$nid your_path_n/ur_slurm_script.sh)
nid=`echo $jobsub | awk '{print $4}'`

nafter=$nid

echo " $i th $nafter depends on $nbefore #####"
#echo " $i th $nafter depends on $nbefore #####"  >> jobs.txt


fi

done

#visulize all the jobs
squeue -u $USER -o "%.8A %.4C %.10m %.20E"

Popularity 1/10 Helpfulness 1/10 Language shell

Source: hpc.nih.gov

Tags: shell slurm time

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Contributed on Dec 06 2022

Niransha

0 Answers Avg Quality 2/10

slurm unlimited time

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