Breaking News: Grepper is joining You.com. Read the official announcement!

BIDS extract JSON data

Troubled Tapir answered on April 9, 2022 Popularity 1/10 Helpfulness 1/10

answer BIDS extract JSON data

BIDS extract JSON data

Comment

import nibabel as nb
import bids
layout = bids.BIDSLayout('/data/bids/ds003130-download/')
imgs = layout.get(extension='.nii.gz', datatype=['fmap', 'func'])
dirs = {"A": {"j": "PA", "j-": "AP"}}  # Truncated for simplicity
for bfile in imgs:
     img = bfile.get_image() 
     ornt = ''.join(nb.aff2axcodes(img.affine)) 
     md = bfile.get_metadata() 
     peaxis = md['PhaseEncodingDirection'] 
     pedir = dirs[ornt[1]][peaxis] 
     print(f"{bfile.filename:<46} {ornt} {peaxis:<3} {pedir}")

Popularity 1/10 Helpfulness 1/10 Language python

Source: github.com

Tags: bids extract json python

Link to this answer
Share Copy Link

Contributed on Apr 09 2022

Troubled Tapir

0 Answers Avg Quality 2/10

Continue with Google

By continuing, I agree that I have read and agree to Greppers's Terms of Service and Privacy Policy.

BIDS extract JSON data

Contents

More Related Answers

BIDS extract JSON data

Grepper

Documentation

Social

Legal

Contact

Oops, You will need to install Grepper and log-in to perform this action.